Locum doctors enjoy flexibility and variety, but the tax side of locum work can be complex. From determining your employment status and registering for Self Assessment to claiming legitimate expenses and planning for tax bills, this hub gives you a solid grounding in the tax essentials every locum GP and hospital doctor needs to understand.
The first and most important question for any locum doctor is whether HMRC considers you self-employed or employed. This determines how you pay tax, which expenses you can claim and whether you need to file a Self Assessment return. Most GP locums working through direct bookings with practices, controlling their own schedule and providing their own equipment, will be classified as self-employed. However, locums working through agencies or on longer-term placements where the practice controls how and when work is done may be deemed employed, or caught by the off-payroll working rules (IR35).
Getting this wrong has serious consequences. If HMRC reclassifies a self-employed locum as employed, the practice (or agency) becomes liable for PAYE and employer NICs on all payments made, plus penalties and interest. The locum may also lose the right to claim business expenses. HMRC's Check Employment Status for Tax (CEST) tool provides an initial indication, but its results are not always reliable for medical locums. Where there is any doubt, take professional advice before starting an engagement, not after HMRC opens an enquiry.
How the engagement is read
Usually self-employed
Direct bookings with practices, where you control your own schedule and provide your own equipment.
May be employed, or inside IR35
Agency work or longer-term placements where the practice controls how and when the work is done.
Self-Assessment Requirements for Locums
Self-employed locum doctors must register with HMRC for Self Assessment within three months of starting locum work. Class 2 National Insurance is no longer a separate registration or a weekly charge: from 6 April 2024 it is treated as paid where profits are at or above the Small Profits Threshold, and it is voluntary below that, so the contributions that actually fall due on locum profits are Class 4. You'll then file an annual tax return reporting all self-employed income and expenses. The deadline is 31 January following the end of the tax year; for example, income earned between 6 April 2025 and 5 April 2026 must be reported by 31 January 2027.
If you also have PAYE income from a salaried NHS role, this must be included on the same return. Many locums underestimate their tax liability because they forget that locum earnings are added on top of salaried income, potentially pushing them into a higher tax band. Payments on account apply. HMRC requires two advance payments (31 January and 31 July), each equal to half the previous year's Self Assessment liability. New locums should set aside 30-40% of net locum income from day one to avoid a cash-flow shock when the first tax bill arrives.
The self-assessment dates named above
Step
When
Register with HMRC
Within three months of starting locum work
File the return
31 January following the end of the tax year
Worked example
Income earned 6 April 2025 to 5 April 2026 is reported by 31 January 2027
Payments on account
31 January and 31 July, each equal to half the previous year's liability
Allowable Expenses for Locum Doctors
Self-employed locums can deduct legitimate business expenses from their taxable income, reducing both income tax and Class 4 NICs. The key test is that the expense must be incurred "wholly and exclusively" for the purpose of the locum business. Common allowable expenses include:
Keep receipts and records for every expense. HMRC can enquire into any return within 12 months of the filing deadline (or longer if they suspect carelessness or fraud), and you will need documentary evidence to support every claim.
Common allowable expenses
Travel to temporary workplaces
Mileage (55p per mile for the first 10,000 business miles in 2026/27, then 25p per mile), parking, train fares and accommodation for distant placements.
Professional indemnity
MDU, MPS or other provider, fully deductible.
Professional subscriptions
GMC registration, BMA membership (relief restricted to 85%), RCGP and Royal College fees.
Medical equipment
Stethoscopes, ophthalmoscopes, bags and clinical tools.
Training and CPD
Courses directly related to your medical practice.
Accountancy fees
Preparing your tax return and business accounts.
Phone, internet and home office
Proportionate business use.
Agency and platform costs
Locum agency fees and platform subscription costs.
Record Keeping Best Practices
Good record keeping is not optional. HMRC requires self-employed individuals to maintain records for at least five years after the 31 January filing deadline for the relevant tax year. For locum doctors, this means keeping systematic records of every session worked, every invoice raised and every expense incurred. Falling behind creates a stressful year-end scramble and increases the risk of under- or over-claiming expenses.
A record-keeping routine
1. Log income and expenses in real time
Use cloud accounting software such as Xero, FreeAgent or QuickBooks.
2. Photograph receipts immediately
Paper fades, and lost receipts cannot support expense claims.
3. Maintain a mileage log
Date, destination, purpose and miles for every business journey.
4. Reconcile bank statements monthly
This catches missing invoices and uncategorised payments.
5. Keep a separate business bank account
It simplifies record keeping and demonstrates clear business boundaries to HMRC.
Tax Planning Strategies for Locum Doctors
Beyond claiming expenses, locum doctors have several strategies available to manage their tax position. Pension contributions are one of the most effective options: if you are not already contributing to the NHS Pension Scheme through a salaried role, making personal pension contributions provides income tax relief at your marginal rate. Even locums who are in the NHS Scheme can make additional voluntary contributions or pay into a SIPP to shelter more income.
Timing is also important. If you expect your income to drop next year (for example, taking a career break, returning to training or reducing sessions), consider deferring invoicing or accelerating expenses into the current year where commercially reasonable. For locums earning above £100,000, the personal allowance taper means effective marginal tax rates can reach 60%; the allowance is withdrawn by £1 for every £2 of adjusted net income above £100,000, so pension contributions or Gift Aid donations restore half of whatever they take off that figure. If your annual locum turnover exceeds the VAT registration threshold (currently £90,000), you must register for VAT, though most medical services are VAT-exempt, some locum agency structures may require standard-rated treatment.
The two thresholds named above
Threshold
What happens at it
£100,000 of income
The personal allowance taper begins, so effective marginal tax rates can reach 60%.
£90,000 of turnover
The VAT registration threshold. Most medical services are exempt, but some locum agency structures may be standard-rated.
Working as a locum and want the status question settled?
IR35 is decided by the engagement rather than the contract, and the limited company, umbrella or sole trader answer depends on your actual sessions. We model it on your own figures, and handle Forms A and B so the work counts towards pensionable service.
Medical work onlyNHS pension, practice accounts and private practice
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One position, not threePractice, pension and personal return read together
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